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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038582 through 18771 annotations produced 1 hits



(CG7988):

Annotation Number : CG7988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038582
Gbrowse : chr3R:14046247-14047173 (+) // 100.0 //
Probeset : 1631435_at
Accessions : protein= NP_650691;, nucleotide= NM_142434;
FlyMine data for FBgn0038582.
BDGP gene expression has embryonic in situ data for CG7988: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0038582 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 24 of 4 1.30None
Head29 ± 24 of 4 1.00None
Eye50 ± 34 of 4 1.69Up
Thoracicoabdominal ganglion43 ± 34 of 4 1.50Up
Salivary gland55 ± 34 of 4 1.86Up
Crop40 ± 34 of 4 1.40None
Midgut43 ± 23 of 4 1.50Up
Tubule27 ± 14 of 4 0.90None
Hindgut38 ± 24 of 4 1.30None
Heart37 ± 64 of 4 1.26None
Fat body41 ± 34 of 4 1.39Up
Ovary31 ± 04 of 4 1.10None
Testis35 ± 14 of 4 1.20None
Male accessory glands38 ± 24 of 4 1.30None
Virgin spermatheca30 ± 44 of 4 1.03None
Mated spermatheca22 ± 34 of 4 0.75None
Adult carcass37 ± 34 of 4 1.30None
Larval CNS39 ± 54 of 4 1.33Up
Larval Salivary gland41 ± 24 of 4 1.40Up
Larval midgut40 ± 42 of 4 1.36None
Larval tubule56 ± 34 of 4 1.90Up
Larval hindgut39 ± 24 of 4 1.33Up
Larval fat body41 ± 14 of 4 1.40Up
Larval trachea52 ± 114 of 4 1.75Up
Larval carcass59 ± 24 of 4 2.00Up
S2 cells (growing)46 ± 14 of 4 1.57Up
Whole fly29 ± 23 of 4

Looking for FBgn0038582. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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