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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038583 through 18771 annotations produced 1 hits



(CG7183):

Annotation Number : CG7183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038583
Gbrowse : chr3R:14043853-14046421 (-) // 99.83 //
Probeset : 1633129_at
Accessions : protein= NP_650692;, nucleotide= NM_142435;
FlyMine data for FBgn0038583.
VDRC has 2 RNAi stocks for FBgn0038583 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 54 of 4 1.20None
Head39 14 of 4 0.70Down
Eye38 24 of 4 0.72Down
Thoracicoabdominal ganglion59 54 of 4 1.10None
Salivary gland56 34 of 4 1.04None
Crop47 44 of 4 0.90None
Midgut43 04 of 4 0.80Down
Tubule57 14 of 4 1.10None
Hindgut52 34 of 4 1.00None
Heart26 14 of 4 0.49Down
Fat body39 44 of 4 0.74Down
Ovary88 54 of 4 1.60Up
Testis105 54 of 4 2.00Up
Male accessory glands46 54 of 4 0.90None
Virgin spermatheca32 04 of 4 0.60Down
Mated spermatheca42 04 of 4 0.78Down
Adult carcass34 13 of 4 0.60Down
Larval CNS61 64 of 4 1.14None
Larval Salivary gland46 34 of 4 0.87None
Larval midgut32 22 of 4 0.61Down
Larval tubule61 34 of 4 1.20None
Larval hindgut38 34 of 4 0.72Down
Larval fat body35 34 of 4 0.70Down
Larval trachea33 74 of 4 0.62Down
Larval carcass34 14 of 4 0.64Down
S2 cells (growing)44 34 of 4 0.82None
Whole fly53 24 of 4

Looking for FBgn0038583. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime