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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038584 through 18771 annotations produced 1 hits



(CG7175):

Annotation Number : CG7175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038584
Gbrowse : chr3R:14047239-14049403 (-) // 100.0 //
Probeset : 1632804_at
Accessions : protein= NP_650693;, nucleotide= NM_142436;
FlyMine data for FBgn0038584.
BDGP gene expression has embryonic in situ data for CG7175: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038584 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 04 of 4 0.30Down
Head85 ± 54 of 4 0.50Down
Eye75 ± 44 of 4 0.41Down
Thoracicoabdominal ganglion59 ± 14 of 4 0.30Down
Salivary gland83 ± 24 of 4 0.46Down
Crop106 ± 54 of 4 0.60Down
Midgut90 ± 24 of 4 0.50Down
Tubule214 ± 54 of 4 1.20Up
Hindgut92 ± 14 of 4 0.50Down
Heart134 ± 64 of 4 0.73Down
Fat body124 ± 114 of 4 0.68Down
Ovary354 ± 84 of 4 1.90Up
Testis65 ± 34 of 4 0.40Down
Male accessory glands108 ± 34 of 4 0.60Down
Virgin spermatheca100 ± 44 of 4 0.55Down
Mated spermatheca112 ± 44 of 4 0.61Down
Adult carcass105 ± 54 of 4 0.60Down
Larval CNS128 ± 94 of 4 0.70Down
Larval Salivary gland148 ± 54 of 4 0.81Down
Larval midgut93 ± 54 of 4 0.51Down
Larval tubule173 ± 104 of 4 0.90None
Larval hindgut148 ± 64 of 4 0.81Down
Larval fat body120 ± 74 of 4 0.70Down
Larval trachea176 ± 74 of 4 0.96None
Larval carcass158 ± 54 of 4 0.87Down
S2 cells (growing)138 ± 14 of 4 0.76Down
Whole fly183 ± 44 of 4

Looking for FBgn0038584. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime