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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038589 through 18771 annotations produced 1 hits



(CG18598):

Annotation Number : CG18598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038589
Gbrowse : chr3R:14076835-14077262 (+) // 100.0 //
Probeset : 1632319_at
Accessions : protein= NP_650698;, nucleotide= NM_142441;
FlyMine data for FBgn0038589.
BioGrid reports that CG18598 interacts with CG6457 .
VDRC has 1 RNAi stocks for FBgn0038589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 54 of 4 3.70Up
Head433 ± 344 of 413.10Up
Eye2511 ± 914 of 475.59Up
Thoracicoabdominal ganglion16 ± 12 of 4 0.50Down
Salivary gland30 ± 13 of 4 0.92None
Crop3 ± 10 of 4 0.10Down
Midgut7 ± 20 of 4 0.20Down
Tubule15 ± 22 of 4 0.50Down
Hindgut10 ± 00 of 4 0.30Down
Heart20 ± 43 of 4 0.63None
Fat body3 ± 10 of 4 0.10Down
Ovary9 ± 12 of 4 0.30Down
Testis277 ± 104 of 4 8.40Up
Male accessory glands5 ± 20 of 4 0.20Down
Virgin spermatheca9 ± 01 of 4 0.29Down
Mated spermatheca6 ± 11 of 4 0.20Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS6 ± 11 of 4 0.20Down
Larval Salivary gland4 ± 10 of 4 0.13Down
Larval midgut6 ± 20 of 4 0.21Down
Larval tubule8 ± 10 of 4 0.30Down
Larval hindgut2 ± 10 of 4 0.06Down
Larval fat body40 ± 183 of 4 1.20None
Larval trachea33 ± 532 of 4 1.00None
Larval carcass32 ± 44 of 4 0.97None
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly33 ± 04 of 4

Looking for FBgn0038589. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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