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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038593 through 18771 annotations produced 1 hits



(CG7146):

Annotation Number : CG7146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038593
Gbrowse : chr3R:14096907-14100168 (-) // 100.0 //
Probeset : 1637189_at
Accessions : protein= NP_650702;, nucleotide= NM_142445;
Interpro : 0005083 // small GTPase regulator activity // inferred from electronic annotation
FlyMine data for FBgn0038593.
BioGrid reports that CG7146 interacts with CG7526 CG8947 .
VDRC has 3 RNAi stocks for FBgn0038593 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 24 of 4 1.30Up
Head34 ± 24 of 4 0.70Down
Eye35 ± 34 of 4 0.71Down
Thoracicoabdominal ganglion53 ± 24 of 4 1.10None
Salivary gland38 ± 33 of 4 0.78None
Crop50 ± 14 of 4 1.00None
Midgut48 ± 24 of 4 1.00None
Tubule52 ± 14 of 4 1.10None
Hindgut40 ± 14 of 4 0.80Down
Heart31 ± 34 of 4 0.63Down
Fat body35 ± 34 of 4 0.70Down
Ovary93 ± 24 of 4 1.90Up
Testis37 ± 24 of 4 0.80Down
Male accessory glands22 ± 52 of 4 0.50Down
Virgin spermatheca43 ± 34 of 4 0.88None
Mated spermatheca40 ± 24 of 4 0.80None
Adult carcass41 ± 14 of 4 0.80None
Larval CNS65 ± 34 of 4 1.31Up
Larval Salivary gland57 ± 24 of 4 1.16None
Larval midgut41 ± 14 of 4 0.82None
Larval tubule70 ± 24 of 4 1.40Up
Larval hindgut53 ± 54 of 4 1.07None
Larval fat body55 ± 44 of 4 1.10None
Larval trachea58 ± 44 of 4 1.16None
Larval carcass48 ± 14 of 4 0.98None
S2 cells (growing)100 ± 04 of 4 2.02Up
Whole fly50 ± 34 of 4

Looking for FBgn0038593. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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