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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038596 through 18771 annotations produced 1 hits



(CG14312):

Annotation Number : CG14312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038596
Gbrowse : chr3R:14108792-14109176 (-) // 100.0 //
Probeset : 1631782_at
Accessions : protein= NP_650704;, nucleotide= NM_142447;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
FlyMine data for FBgn0038596.
VDRC has 2 RNAi stocks for FBgn0038596 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 ± 114 of 417.60Up
Head40 ± 34 of 4 4.80Up
Eye33 ± 14 of 4 3.96Up
Thoracicoabdominal ganglion111 ± 24 of 413.10Up
Salivary gland6 ± 30 of 4 0.78None
Crop2 ± 00 of 4 0.30Down
Midgut7 ± 30 of 4 0.90None
Tubule4 ± 10 of 4 0.60Down
Hindgut1 ± 00 of 4 0.20Down
Heart2 ± 00 of 4 0.30Down
Fat body6 ± 40 of 4 0.81None
Ovary2 ± 00 of 4 0.30Down
Testis13 ± 01 of 4 1.60Up
Male accessory glands6 ± 10 of 4 0.70None
Virgin spermatheca4 ± 10 of 4 0.53None
Mated spermatheca6 ± 20 of 4 0.73None
Adult carcass4 ± 10 of 4 0.50None
Larval CNS141 ± 84 of 416.63Up
Larval Salivary gland7 ± 11 of 4 0.84None
Larval midgut2 ± 00 of 4 0.25Down
Larval tubule7 ± 20 of 4 0.90None
Larval hindgut2 ± 00 of 4 0.27Down
Larval fat body9 ± 10 of 4 1.10None
Larval trachea3 ± 00 of 4 0.39Down
Larval carcass8 ± 20 of 4 0.95None
S2 cells (growing)2 ± 00 of 4 0.31Down
Whole fly8 ± 10 of 4

Looking for FBgn0038596. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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