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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038597 through 18771 annotations produced 1 hits


Annotation Number : CG8064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038597
Gbrowse : chr3R:14109383-14112351 (+) // 100.0 //
Probeset : 1627104_at
Accessions : protein= NP_650705;, nucleotide= NM_142448;
FlyMine data for FBgn0038597.
BDGP gene expression has embryonic in situ data for CG8064: 16 pix of staining in 9 body parts.
Homophila reports that CG8064 is a close match (4e-14) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
VDRC has 4 RNAi stocks for FBgn0038597 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 04 of 4 0.80Down
Head40 14 of 4 0.70Down
Eye31 14 of 4 0.56Down
Thoracicoabdominal ganglion48 34 of 4 0.90None
Salivary gland40 33 of 4 0.72Down
Crop49 34 of 4 0.90None
Midgut53 12 of 4 0.90None
Tubule57 44 of 4 1.00None
Hindgut47 44 of 4 0.80None
Heart33 24 of 4 0.59Down
Fat body43 54 of 4 0.76Down
Ovary83 34 of 4 1.50Up
Testis19 14 of 4 0.30Down
Male accessory glands73 44 of 4 1.30Up
Virgin spermatheca46 24 of 4 0.82Down
Mated spermatheca47 24 of 4 0.83Down
Adult carcass38 14 of 4 0.70Down
Larval CNS113 64 of 4 2.01Up
Larval Salivary gland66 34 of 4 1.18None
Larval midgut46 53 of 4 0.82None
Larval tubule26 34 of 4 0.50Down
Larval hindgut59 24 of 4 1.05None
Larval fat body15 53 of 4 0.30Down
Larval trachea79 104 of 4 1.41Up
Larval carcass55 124 of 4 0.98None
S2 cells (growing)121 34 of 4 2.15Up
Whole fly56 14 of 4

Looking for FBgn0038597. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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