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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038602 through 18771 annotations produced 1 hits



(CG7126):

Annotation Number : CG7126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038602
Gbrowse : chr3R:14127891-14128571 (-) // 100.0 //
Probeset : 1636663_at
Accessions : protein= NP_650709;, nucleotide= NM_142452;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038602.
VDRC has 2 RNAi stocks for FBgn0038602 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 2.10None
Head0 ± 00 of 4 1.40None
Eye0 ± 00 of 4 1.56None
Thoracicoabdominal ganglion0 ± 00 of 4 1.30None
Salivary gland4 ± 10 of 4 9.67None
Crop1 ± 00 of 4 2.60Up
Midgut0 ± 00 of 4 1.70None
Tubule1 ± 00 of 4 2.50None
Hindgut0 ± 00 of 4 1.70None
Heart1 ± 00 of 4 3.89None
Fat body3 ± 10 of 4 6.56None
Ovary0 ± 00 of 4 0.70None
Testis0 ± 00 of 4 1.00None
Male accessory glands5 ± 20 of 411.30None
Virgin spermatheca2 ± 00 of 4 6.22None
Mated spermatheca3 ± 10 of 4 6.94None
Adult carcass2 ± 00 of 4 5.40Up
Larval CNS0 ± 00 of 4 0.89None
Larval Salivary gland1 ± 00 of 4 2.22Up
Larval midgut0 ± 00 of 4 1.94None
Larval tubule0 ± 00 of 4 1.90None
Larval hindgut0 ± 00 of 4 1.22None
Larval fat body0 ± 00 of 4 1.80None
Larval trachea2 ± 20 of 4 5.17None
Larval carcass0 ± 00 of 4 1.78None
S2 cells (growing)2 ± 10 of 4 5.11None
Whole fly0 ± 00 of 4

Looking for FBgn0038602. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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