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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038603 through 18771 annotations produced 1 hits



Protein Kinase D (PKD):

Annotation Number : CG7125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038603
Gbrowse : chr3R:14128997-14140129 (-) // 100.0 //
Probeset : 1640486_s_at
Accessions : protein= NP_001138074; /// NP_650710; /// NP_732325; /// NP_732326; /// NP_732327;, nucleotide= NM_001144602; /// NM_142453; /// NM_169803; /// NM_169804; /// NM_169805;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0038603.
Homophila reports that CG7125 is a close match (5e-11) to human gene ANKK1 (NP_848605), a gene associated with Dopamine receptor D2, reduced brain density of (3).
TRiP has 1 RNAi stocks for FBgn0038603 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 ± 14 of 4 3.30Up
Head163 ± 84 of 4 2.50Up
Eye133 ± 24 of 4 2.06Up
Thoracicoabdominal ganglion212 ± 84 of 4 3.30Up
Salivary gland81 ± 84 of 4 1.26None
Crop162 ± 44 of 4 2.50Up
Midgut33 ± 13 of 4 0.50Down
Tubule14 ± 22 of 4 0.20Down
Hindgut289 ± 104 of 4 4.50Up
Heart228 ± 24 of 4 3.53Up
Fat body386 ± 384 of 4 5.98Up
Ovary1 ± 00 of 4 0.00Down
Testis67 ± 44 of 4 1.00None
Male accessory glands198 ± 104 of 4 3.10Up
Virgin spermatheca264 ± 84 of 4 4.09Up
Mated spermatheca301 ± 234 of 4 4.65Up
Adult carcass217 ± 104 of 4 3.40Up
Larval CNS84 ± 94 of 4 1.31Up
Larval Salivary gland23 ± 14 of 4 0.36Down
Larval midgut25 ± 51 of 4 0.39Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut289 ± 254 of 4 4.47Up
Larval fat body178 ± 94 of 4 2.80Up
Larval trachea339 ± 254 of 4 5.25Up
Larval carcass169 ± 124 of 4 2.62Up
S2 cells (growing)29 ± 14 of 4 0.45Down
Whole fly64 ± 54 of 4

Looking for FBgn0038603. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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