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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038607 through 18771 annotations produced 1 hits



(CG7669):

Annotation Number : CG7669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038607
Gbrowse : chr3R:14187715-14190007 (+) // 100.0 //
Probeset : 1637784_at
Accessions : protein= NP_650714;, nucleotide= NM_142457;
FlyMine data for FBgn0038607.
BDGP gene expression has embryonic in situ data for CG7669: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye4 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland11 ± 60 of 4 0.19Down
Crop2 ± 20 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.04Down
Fat body1 ± 10 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis766 ± 134 of 412.50Up
Male accessory glands10 ± 21 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland9 ± 21 of 4 0.16Down
Larval midgut4 ± 10 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.03Down
Larval fat body70 ± 393 of 4 1.20None
Larval trachea3 ± 30 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly61 ± 54 of 4

Looking for FBgn0038607. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime