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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038612 through 18771 annotations produced 1 hits



corona (cona):

Annotation Number : CG7676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038612
Gbrowse : chr3R:14211567-14212360 (+) // 100.0 //
Probeset : 1624357_at
Accessions : protein= NP_650719;, nucleotide= NM_142462;
Pathway : 0000795 // synaptonemal complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038612.
VDRC has 1 RNAi stocks for FBgn0038612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.20Down
Head3 ± 10 of 4 0.20Down
Eye11 ± 21 of 4 0.52Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland14 ± 31 of 4 0.63None
Crop6 ± 21 of 4 0.30Down
Midgut3 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.20Down
Heart2 ± 00 of 4 0.12Down
Fat body16 ± 62 of 4 0.72None
Ovary5 ± 11 of 4 0.20Down
Testis342 ± 104 of 415.20Up
Male accessory glands5 ± 30 of 4 0.20Down
Virgin spermatheca9 ± 20 of 4 0.40Down
Mated spermatheca15 ± 40 of 4 0.69None
Adult carcass5 ± 30 of 4 0.20Down
Larval CNS9 ± 22 of 4 0.42Down
Larval Salivary gland5 ± 20 of 4 0.26Down
Larval midgut6 ± 20 of 4 0.28Down
Larval tubule5 ± 30 of 4 0.20Down
Larval hindgut3 ± 10 of 4 0.14Down
Larval fat body82 ± 304 of 4 3.60None
Larval trachea4 ± 61 of 4 0.21Down
Larval carcass3 ± 10 of 4 0.17Down
S2 cells (growing)7 ± 21 of 4 0.35Down
Whole fly22 ± 14 of 4

Looking for FBgn0038612. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime