FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038613 through 18771 annotations produced 1 hits

Vacuolar H[+] ATPase subunit 100-4 (Vha100-4):

Annotation Number : CG7678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038613
Gbrowse : chr3R:14212554-14215525 (-) // 100.0 //
Probeset : 1636240_at
Accessions : protein= NP_650720;, nucleotide= NM_142463;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0033177 // proton-transporting two-sector ATPase compl
FlyMine data for FBgn0038613.
BDGP gene expression has embryonic in situ data for CG7678: 26 pix of staining in 5 body parts.
Homophila reports that CG7678 is a close match (1e-106) to human gene OC116;OPTB1;TCIRG1;TIRC7 (NP_006044), a gene associated with Osteopetrosis, recessive 1, 259700 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.10	None
Head	4 ± 1	0 of 4	0.10	None
Eye	0 ± 0	0 of 4	0.02	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.10	None
Salivary gland	15 ± 5	0 of 4	0.45	None
Crop	7 ± 2	0 of 4	0.20	None
Midgut	725 ± 12	4 of 4	21.90	Up
Tubule	10 ± 1	0 of 4	0.30	Down
Hindgut	9 ± 1	1 of 4	0.30	None
Heart	2 ± 0	0 of 4	0.09	None
Fat body	7 ± 3	1 of 4	0.22	None
Ovary	3 ± 0	0 of 4	0.10	None
Testis	5 ± 0	0 of 4	0.20	None
Male accessory glands	6 ± 1	0 of 4	0.20	None
Virgin spermatheca	3 ± 1	0 of 4	0.12	None
Mated spermatheca	6 ± 2	1 of 4	0.19	None
Adult carcass	10 ± 2	0 of 4	0.30	None
Larval CNS	6 ± 1	1 of 4	0.20	None
Larval Salivary gland	8 ± 1	0 of 4	0.25	None
Larval midgut	1181 ± 19	4 of 4	35.74	Up
Larval tubule	6 ± 0	0 of 4	0.20	None
Larval hindgut	12 ± 2	4 of 4	0.38	None
Larval fat body	8 ± 1	0 of 4	0.20	None
Larval trachea	4 ± 3	0 of 4	0.15	None
Larval carcass	8 ± 2	1 of 4	0.26	None
S2 cells (growing)	8 ± 2	0 of 4	0.27	None
Whole fly	33 ± 11	4 of 4

Looking for FBgn0038613. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720