FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038627 through 18771 annotations produced 1 hits

(CG7694):

Annotation Number : CG7694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038627
Gbrowse : chr3R:14398816-14416377 (+) // 100.0 //
Probeset : 1633566_at
Accessions : protein= NP_001138076; /// NP_650729;, nucleotide= NM_001144604; /// NM_142472;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0038627.
BDGP gene expression has embryonic in situ data for CG7694: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038627 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	100 ± 0	4 of 4	1.10	None
Head	86 ± 4	4 of 4	1.00	None
Eye	56 ± 3	4 of 4	0.65	Down
Thoracicoabdominal ganglion	119 ± 6	4 of 4	1.40	Up
Salivary gland	133 ± 2	4 of 4	1.52	Up
Crop	137 ± 1	4 of 4	1.60	Up
Midgut	98 ± 0	4 of 4	1.10	None
Tubule	150 ± 11	4 of 4	1.70	Up
Hindgut	130 ± 3	4 of 4	1.50	Up
Heart	194 ± 14	4 of 4	2.22	Up
Fat body	217 ± 22	4 of 4	2.48	Up
Ovary	57 ± 1	4 of 4	0.70	Down
Testis	209 ± 49	4 of 4	2.40	None
Male accessory glands	201 ± 6	4 of 4	2.30	Up
Virgin spermatheca	99 ± 6	4 of 4	1.14	None
Mated spermatheca	98 ± 3	4 of 4	1.12	None
Adult carcass	176 ± 9	4 of 4	2.00	Up
Larval CNS	89 ± 3	4 of 4	1.03	None
Larval Salivary gland	240 ± 13	4 of 4	2.75	Up
Larval midgut	139 ± 6	4 of 4	1.60	Up
Larval tubule	177 ± 6	4 of 4	2.00	Up
Larval hindgut	113 ± 4	4 of 4	1.30	None
Larval fat body	232 ± 19	4 of 4	2.60	Up
Larval trachea	134 ± 9	4 of 4	1.54	Up
Larval carcass	149 ± 5	4 of 4	1.70	Up
S2 cells (growing)	6 ± 0	3 of 4	0.07	Down
Whole fly	87 ± 9	4 of 4

Looking for FBgn0038627. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720