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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038629 through 18771 annotations produced 1 hits



(CG14304):

Annotation Number : CG14304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038629
Gbrowse : chr3R:14418739-14424475 (-) // 100.0 //
Probeset : 1634123_at
Accessions : protein= NP_001138080; /// NP_650731;, nucleotide= NM_001144608; /// NM_142474;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0038629.
VDRC has 3 RNAi stocks for FBgn0038629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.50None
Head4 ± 10 of 4 1.40None
Eye7 ± 20 of 4 2.37None
Thoracicoabdominal ganglion6 ± 10 of 4 2.10None
Salivary gland3 ± 10 of 4 0.94None
Crop5 ± 20 of 4 1.60None
Midgut10 ± 30 of 4 3.30None
Tubule5 ± 10 of 4 1.80Up
Hindgut2 ± 10 of 4 0.80None
Heart5 ± 10 of 4 1.61None
Fat body5 ± 40 of 4 1.75None
Ovary3 ± 00 of 4 1.00None
Testis3 ± 10 of 4 1.20None
Male accessory glands8 ± 30 of 4 2.70None
Virgin spermatheca7 ± 20 of 4 2.53None
Mated spermatheca10 ± 10 of 4 3.36Up
Adult carcass7 ± 20 of 4 2.50None
Larval CNS2 ± 20 of 4 0.71None
Larval Salivary gland4 ± 10 of 4 1.43None
Larval midgut7 ± 20 of 4 2.42None
Larval tubule3 ± 10 of 4 1.20None
Larval hindgut14 ± 10 of 4 4.58Up
Larval fat body3 ± 00 of 4 1.00None
Larval trachea14 ± 42 of 4 4.49Up
Larval carcass239 ± 194 of 476.74Up
S2 cells (growing)5 ± 10 of 4 1.76None
Whole fly3 ± 00 of 4

Looking for FBgn0038629. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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