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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038630 through 18771 annotations produced 1 hits


(CG14305):

Annotation Number : CG14305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038630
Gbrowse : chr3R:14424477-14425819 (+) // 100.0 //
Probeset : 1634274_s_at
Accessions : protein= NP_650732; /// NP_732357;, nucleotide= NM_142475; /// NM_169825;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0038630.
BDGP gene expression has embryonic in situ data for CG14305: 2 pix of staining in 1 body parts.
Homophila reports that CG14305 is a close match (9e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
VDRC has 2 RNAi stocks for FBgn0038630 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 10 of 4 0.02Down
Crop5 ± 20 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 10 of 4 0.01Down
Ovary2 ± 10 of 4 0.00Down
Testis1480 ± 394 of 4 9.90Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.02Down
Adult carcass8 ± 30 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body168 ± 943 of 4 1.10None
Larval trachea5 ± 101 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly150 ± 104 of 4

Looking for FBgn0038630. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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