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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038631 through 18771 annotations produced 1 hits



(CG7695):

Annotation Number : CG7695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038631
Gbrowse : chr3R:14442475-14443205 (-) // 100.0 //
Probeset : 1630831_at
Accessions : protein= NP_650733;, nucleotide= NM_142476;
FlyMine data for FBgn0038631.
VDRC has 1 RNAi stocks for FBgn0038631 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.00Down
Head336 ± 164 of 4 0.70Down
Eye20 ± 34 of 4 0.04Down
Thoracicoabdominal ganglion22 ± 103 of 4 0.00Down
Salivary gland28 ± 33 of 4 0.06Down
Crop45 ± 44 of 4 0.10Down
Midgut8 ± 11 of 4 0.00Down
Tubule10 ± 12 of 4 0.00Down
Hindgut206 ± 104 of 4 0.40Down
Heart11 ± 13 of 4 0.02Down
Fat body46 ± 254 of 4 0.09Down
Ovary17 ± 04 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands12 ± 40 of 4 0.00Down
Virgin spermatheca258 ± 84 of 4 0.51Down
Mated spermatheca349 ± 564 of 4 0.69None
Adult carcass2305 ± 244 of 4 4.60Up
Larval CNS9 ± 13 of 4 0.02Down
Larval Salivary gland6 ± 20 of 4 0.01Down
Larval midgut9 ± 11 of 4 0.02Down
Larval tubule8 ± 00 of 4 0.00Down
Larval hindgut8 ± 11 of 4 0.02Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea31 ± 174 of 4 0.06Down
Larval carcass87 ± 114 of 4 0.17Down
S2 cells (growing)3 ± 10 of 4 0.01Down
Whole fly504 ± 254 of 4

Looking for FBgn0038631. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime