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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038638 through 18771 annotations produced 1 hits



connectin-like (CG7702):

Annotation Number : CG7702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038638
Gbrowse : chr3R:14495113-14500401 (+) // 100.0 //
Probeset : 1627420_s_at
Accessions : protein= NP_650740; /// NP_732365;, nucleotide= NM_142483; /// NM_169829;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0038638.
BDGP gene expression has embryonic in situ data for CG7702: 17 pix of staining in 9 body parts.
Homophila reports that CG7702 is a close match (6e-15) to human gene ALS;IGFALS (NP_004961), a gene associated with Acid-labile subunit, deficiency of (3).
VDRC has 5 RNAi stocks for FBgn0038638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 14 of 4 0.40Down
Head16 ± 14 of 4 0.20Down
Eye28 ± 14 of 4 0.34Down
Thoracicoabdominal ganglion34 ± 14 of 4 0.40Down
Salivary gland23 ± 61 of 4 0.27Down
Crop16 ± 14 of 4 0.20Down
Midgut675 ± 194 of 4 8.00Up
Tubule781 ± 614 of 4 9.30Up
Hindgut103 ± 24 of 4 1.20Up
Heart20 ± 14 of 4 0.25Down
Fat body26 ± 114 of 4 0.32Down
Ovary26 ± 54 of 4 0.30Down
Testis109 ± 24 of 4 1.30Up
Male accessory glands9 ± 51 of 4 0.10Down
Virgin spermatheca21 ± 14 of 4 0.26Down
Mated spermatheca21 ± 24 of 4 0.25Down
Adult carcass15 ± 21 of 4 0.20Down
Larval CNS79 ± 104 of 4 0.95None
Larval Salivary gland157 ± 144 of 4 1.87Up
Larval midgut1408 ± 494 of 416.74Up
Larval tubule706 ± 274 of 4 8.40Up
Larval hindgut408 ± 244 of 4 4.86Up
Larval fat body27 ± 33 of 4 0.30Down
Larval trachea56 ± 114 of 4 0.67Down
Larval carcass116 ± 124 of 4 1.38None
S2 cells (growing)70 ± 74 of 4 0.84None
Whole fly84 ± 34 of 4

Looking for FBgn0038638. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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