Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038643 through 18771 annotations produced 1 hits



(CG14300):

Annotation Number : CT33930
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038643
Gbrowse : chr3R:14519041-14519319 (-) // 100.0 //
Probeset : 1627322_at
Accessions : protein= NP_001014639;, nucleotide= NM_001014639;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0038643.
VDRC has 3 RNAi stocks for FBgn0038643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 0.70None
Head9 ± 30 of 4 0.90None
Eye10 ± 62 of 4 1.01None
Thoracicoabdominal ganglion6 ± 10 of 4 0.60None
Salivary gland24 ± 32 of 4 2.30Up
Crop11 ± 00 of 4 1.10None
Midgut22 ± 11 of 4 2.10Up
Tubule11 ± 10 of 4 1.10None
Hindgut9 ± 10 of 4 0.90None
Heart9 ± 10 of 4 0.86None
Fat body14 ± 60 of 4 1.37None
Ovary6 ± 10 of 4 0.60None
Testis5 ± 20 of 4 0.50None
Male accessory glands5 ± 20 of 4 0.50None
Virgin spermatheca14 ± 10 of 4 1.36None
Mated spermatheca13 ± 21 of 4 1.24None
Adult carcass20 ± 30 of 4 1.90Up
Larval CNS7 ± 40 of 4 0.73None
Larval Salivary gland10 ± 11 of 4 0.95None
Larval midgut4802 ± 2014 of 4445.66Up
Larval tubule11 ± 30 of 4 1.00None
Larval hindgut21 ± 23 of 4 2.00Up
Larval fat body15 ± 40 of 4 1.50None
Larval trachea8 ± 21 of 4 0.79None
Larval carcass21 ± 43 of 4 1.99None
S2 cells (growing)11 ± 01 of 4 1.06None
Whole fly10 ± 10 of 4

Looking for FBgn0038643. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime