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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038645 through 18771 annotations produced 1 hits



(CG7714):

Annotation Number : CG7714
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038645
Gbrowse : chr3R:14551120-14552156 (-) // 99.48 //
Probeset : 1633706_at
Accessions : protein= NP_650747;, nucleotide= NM_142490;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0038645.
BDGP gene expression has embryonic in situ data for CG7714: 17 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0038645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.30None
Head4 ± 00 of 4 0.40None
Eye4 ± 20 of 4 0.44None
Thoracicoabdominal ganglion7 ± 10 of 4 0.60None
Salivary gland19 ± 40 of 4 1.77None
Crop7 ± 20 of 4 0.60None
Midgut17 ± 10 of 4 1.60None
Tubule12 ± 00 of 4 1.10None
Hindgut10 ± 20 of 4 0.90None
Heart10 ± 00 of 4 0.96None
Fat body21 ± 43 of 4 1.93Up
Ovary4 ± 10 of 4 0.40None
Testis4 ± 20 of 4 0.40None
Male accessory glands9 ± 30 of 4 0.90None
Virgin spermatheca11 ± 20 of 4 1.03None
Mated spermatheca7 ± 10 of 4 0.65None
Adult carcass18 ± 10 of 4 1.60None
Larval CNS6 ± 32 of 4 0.60None
Larval Salivary gland3 ± 10 of 4 0.30None
Larval midgut4485 ± 1634 of 4403.19Up
Larval tubule174 ± 504 of 415.70Up
Larval hindgut1636 ± 1214 of 4147.11Up
Larval fat body4 ± 10 of 4 0.40None
Larval trachea2 ± 10 of 4 0.18Down
Larval carcass4 ± 00 of 4 0.36None
S2 cells (growing)20 ± 34 of 4 1.83None
Whole fly11 ± 21 of 4

Looking for FBgn0038645. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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