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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038647 through 18771 annotations produced 1 hits



(CG14302):

Annotation Number : CG14302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038647
Gbrowse : chr3R:14558502-14558759 (+) // 98.47 //
Probeset : 1641250_at
Accessions : protein= NP_650749;, nucleotide= NM_142492;
FlyMine data for FBgn0038647.
BDGP gene expression has embryonic in situ data for CG14302: 4 pix of staining in 1 body parts.
BioGrid reports that CG14302 interacts with CG15710 CG3052 CG9418 CG9653 CG6246 .
VDRC has 3 RNAi stocks for FBgn0038647 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.40None
Head4 ± 10 of 4 0.30None
Eye7 ± 10 of 4 0.51None
Thoracicoabdominal ganglion9 ± 10 of 4 0.60None
Salivary gland27 ± 40 of 4 1.98None
Crop9 ± 20 of 4 0.70None
Midgut16 ± 31 of 4 1.20None
Tubule6 ± 20 of 4 0.40Down
Hindgut26 ± 14 of 4 1.90None
Heart0 ± 00 of 4 0.07None
Fat body10 ± 61 of 4 0.74None
Ovary6 ± 01 of 4 0.50None
Testis13 ± 20 of 4 0.90None
Male accessory glands10 ± 30 of 4 0.70None
Virgin spermatheca13 ± 22 of 4 0.93None
Mated spermatheca11 ± 21 of 4 0.80None
Adult carcass14 ± 20 of 4 1.00None
Larval CNS14 ± 73 of 4 1.05None
Larval Salivary gland6 ± 20 of 4 0.49None
Larval midgut5656 ± 1914 of 4403.30Up
Larval tubule11 ± 22 of 4 0.80None
Larval hindgut47 ± 134 of 4 3.35None
Larval fat body292 ± 1273 of 420.80None
Larval trachea383 ± 6842 of 427.32None
Larval carcass18 ± 14 of 4 1.33None
S2 cells (growing)29 ± 34 of 4 2.08None
Whole fly14 ± 72 of 4

Looking for FBgn0038647. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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