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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038651 through 18771 annotations produced 1 hits


Annotation Number : CG14299
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038651
Gbrowse : chr3R:14576293-14584588 (-) // 100.0 //
Probeset : 1625102_at
Accessions : protein= NP_001014640; /// NP_650752;, nucleotide= NM_001014640; /// NM_142495;
FlyMine data for FBgn0038651.
BDGP gene expression has embryonic in situ data for CG14299: 6 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0038651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038651 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 24 of 4 1.00None
Head110 74 of 4 1.10None
Eye83 44 of 4 0.86None
Thoracicoabdominal ganglion86 64 of 4 0.90None
Salivary gland238 124 of 4 2.47Up
Crop117 94 of 4 1.20None
Midgut128 44 of 4 1.30Up
Tubule288 144 of 4 3.00Up
Hindgut125 74 of 4 1.30Up
Heart149 114 of 4 1.55Up
Fat body172 104 of 4 1.79Up
Ovary127 54 of 4 1.30Up
Testis44 54 of 4 0.50Down
Male accessory glands188 154 of 4 2.00Up
Virgin spermatheca301 94 of 4 3.12Up
Mated spermatheca263 144 of 4 2.73Up
Adult carcass154 154 of 4 1.60Up
Larval CNS94 24 of 4 0.97None
Larval Salivary gland213 104 of 4 2.22Up
Larval midgut238 154 of 4 2.47Up
Larval tubule458 74 of 4 4.70Up
Larval hindgut202 154 of 4 2.09Up
Larval fat body220 194 of 4 2.30Up
Larval trachea189 164 of 4 1.97Up
Larval carcass187 134 of 4 1.95Up
S2 cells (growing)150 14 of 4 1.56Up
Whole fly96 44 of 4

Looking for FBgn0038651. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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