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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038653 through 18771 annotations produced 1 hits



(CG18208):

Annotation Number : CG18208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038653
Gbrowse : chr3R:14631872-14674113 (-) // 100.0 //
Probeset : 1633580_at
Accessions : protein= NP_650754;, nucleotide= NM_142497;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0038653.
Homophila reports that CG18208 is a close match (7e-11) to human gene OPRM1 (NP_001008505), a gene associated with [Response to morphine-6-glucuronide] (3);{Epilepsy, idiopathic generalized, susceptibility to}, 600669 (3).
VDRC has 2 RNAi stocks for FBgn0038653 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 24 of 412.80Up
Head6 ± 20 of 4 1.50None
Eye15 ± 32 of 4 3.53None
Thoracicoabdominal ganglion44 ± 74 of 410.10Up
Salivary gland13 ± 40 of 4 3.11None
Crop4 ± 20 of 4 1.00None
Midgut4 ± 10 of 4 1.10None
Tubule6 ± 10 of 4 1.40None
Hindgut3 ± 10 of 4 0.80None
Heart4 ± 00 of 4 1.02None
Fat body6 ± 40 of 4 1.43None
Ovary2 ± 10 of 4 0.60None
Testis6 ± 10 of 4 1.60None
Male accessory glands5 ± 40 of 4 1.30None
Virgin spermatheca2 ± 00 of 4 0.63None
Mated spermatheca1 ± 00 of 4 0.42None
Adult carcass3 ± 10 of 4 0.80None
Larval CNS19 ± 40 of 4 4.35Up
Larval Salivary gland10 ± 20 of 4 2.44None
Larval midgut3 ± 00 of 4 0.72None
Larval tubule4 ± 10 of 4 1.00None
Larval hindgut4 ± 10 of 4 1.07None
Larval fat body3 ± 10 of 4 0.90None
Larval trachea6 ± 30 of 4 1.39None
Larval carcass5 ± 10 of 4 1.24None
S2 cells (growing)2 ± 10 of 4 0.63None
Whole fly4 ± 10 of 4

Looking for FBgn0038653. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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