FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038655 through 18771 annotations produced 1 hits

/// GA12886 /// CG14297 (CG14297 /// DpseGA12886 /// DvirGJ14544):

Annotation Number : CG14297
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038655
Gbrowse : chr3R:14723839-14724957 (+) // 100.0 //
Probeset : 1633618_at
Accessions : protein= NP_650756;, nucleotide= NM_142499;
Pathway : 0005737 // cytoplasm // non-traceable author statement
Interpro : 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine
FlyMine data for FBgn0038655.
Homophila reports that CG14297 is a close match (5e-16) to human gene (NP_004291), a gene associated with .
BioGrid reports that CG14297 interacts with CG4813 .
VDRC has 1 RNAi stocks for FBgn0038655 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 0	2 of 4	0.10	Down
Head	5 ± 2	1 of 4	0.10	Down
Eye	3 ± 1	0 of 4	0.03	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	Down
Salivary gland	6 ± 3	0 of 4	0.06	Down
Crop	1 ± 0	0 of 4	0.00	Down
Midgut	5 ± 1	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	3 ± 1	0 of 4	0.00	Down
Heart	1 ± 0	0 of 4	0.01	Down
Fat body	1 ± 0	0 of 4	0.01	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1299 ± 22	4 of 4	11.90	Up
Male accessory glands	5 ± 3	0 of 4	0.10	Down
Virgin spermatheca	1 ± 0	0 of 4	0.01	Down
Mated spermatheca	2 ± 0	0 of 4	0.02	Down
Adult carcass	2 ± 0	0 of 4	0.00	Down
Larval CNS	0 ± 0	0 of 4	0.01	Down
Larval Salivary gland	4 ± 1	0 of 4	0.04	Down
Larval midgut	3 ± 1	0 of 4	0.03	Down
Larval tubule	3 ± 0	0 of 4	0.00	Down
Larval hindgut	2 ± 1	0 of 4	0.02	Down
Larval fat body	155 ± 81	3 of 4	1.40	None
Larval trachea	5 ± 5	1 of 4	0.05	Down
Larval carcass	2 ± 0	0 of 4	0.02	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	109 ± 6	4 of 4

Looking for FBgn0038655. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720