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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038658 through 18771 annotations produced 1 hits



/// GA12884 /// CG14292 (CG14292 /// DpseGA12884 /// DvirGJ14186):

Annotation Number : CG14292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038658
Gbrowse : chr3R:14730654-14731377 (-) // 100.0 //
Probeset : 1635724_at
Accessions : protein= NP_650759;, nucleotide= NM_142502;
FlyMine data for FBgn0038658.
VDRC has 2 RNAi stocks for FBgn0038658 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye5 ± 21 of 4 0.00Down
Thoracicoabdominal ganglion7 ± 00 of 4 0.00Down
Salivary gland18 ± 41 of 4 0.02Down
Crop9 ± 31 of 4 0.00Down
Midgut46 ± 64 of 4 0.00Down
Tubule6669 ± 1834 of 4 5.50Up
Hindgut14 ± 24 of 4 0.00Down
Heart91 ± 274 of 4 0.08Down
Fat body39 ± 293 of 4 0.03Down
Ovary2 ± 00 of 4 0.00Down
Testis6 ± 01 of 4 0.00Down
Male accessory glands11 ± 62 of 4 0.00Down
Virgin spermatheca84 ± 683 of 4 0.07Down
Mated spermatheca14 ± 61 of 4 0.01Down
Adult carcass77 ± 443 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.00Down
Larval Salivary gland5 ± 10 of 4 0.00Down
Larval midgut22 ± 32 of 4 0.02Down
Larval tubule3778 ± 1444 of 4 3.10Up
Larval hindgut517 ± 444 of 4 0.43Down
Larval fat body14 ± 72 of 4 0.00Down
Larval trachea2 ± 20 of 4 0.00Down
Larval carcass37 ± 64 of 4 0.03Down
S2 cells (growing)3 ± 00 of 4 0.00Down
Whole fly1210 ± 1064 of 4

Looking for FBgn0038658. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime