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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038665 through 18771 annotations produced 1 hits



(CG12269):

Annotation Number : CG12269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038665
Gbrowse : chr3R:14803988-14804499 (-) // 100.0 //
Probeset : 1626369_at
Accessions : protein= NP_524211;, nucleotide= NM_079487;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0038665.
VDRC has 3 RNAi stocks for FBgn0038665 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1014 ± 344 of 437.50Up
Head789 ± 614 of 429.20Up
Eye1768 ± 714 of 465.37Up
Thoracicoabdominal ganglion883 ± 314 of 432.60Up
Salivary gland3 ± 00 of 4 0.11Down
Crop6 ± 10 of 4 0.20Down
Midgut5 ± 10 of 4 0.20Down
Tubule4 ± 10 of 4 0.20Down
Hindgut5 ± 10 of 4 0.20Down
Heart5 ± 10 of 4 0.22Down
Fat body10 ± 61 of 4 0.38Down
Ovary2 ± 00 of 4 0.10Down
Testis4 ± 00 of 4 0.20Down
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.18Down
Mated spermatheca8 ± 30 of 4 0.31Down
Adult carcass11 ± 40 of 4 0.40Down
Larval CNS90 ± 144 of 4 3.36Up
Larval Salivary gland3 ± 10 of 4 0.14Down
Larval midgut7 ± 20 of 4 0.28Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut11 ± 11 of 4 0.41Down
Larval fat body4 ± 10 of 4 0.20Down
Larval trachea15 ± 251 of 4 0.58None
Larval carcass18 ± 21 of 4 0.67Down
S2 cells (growing)5 ± 10 of 4 0.19Down
Whole fly27 ± 14 of 4

Looking for FBgn0038665. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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