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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038675 through 18771 annotations produced 1 hits



(CG6013):

Annotation Number : CG6013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038675
Gbrowse : chr3R:14857250-14858138 (+) // 100.0 //
Probeset : 1635247_at
Accessions : protein= NP_650777;, nucleotide= NM_142520;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0038675.
BDGP gene expression has embryonic in situ data for CG6013: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038675 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain206 ± 44 of 4 2.20Up
Head127 ± 24 of 4 1.30Up
Eye301 ± 104 of 4 3.16Up
Thoracicoabdominal ganglion186 ± 74 of 4 2.00Up
Salivary gland94 ± 64 of 4 0.99None
Crop98 ± 54 of 4 1.00None
Midgut65 ± 14 of 4 0.70Down
Tubule41 ± 33 of 4 0.40Down
Hindgut61 ± 24 of 4 0.60Down
Heart88 ± 54 of 4 0.93None
Fat body56 ± 74 of 4 0.60Down
Ovary176 ± 14 of 4 1.80Up
Testis164 ± 44 of 4 1.70Up
Male accessory glands97 ± 34 of 4 1.00None
Virgin spermatheca65 ± 44 of 4 0.69Down
Mated spermatheca72 ± 54 of 4 0.76Down
Adult carcass79 ± 84 of 4 0.80None
Larval CNS133 ± 84 of 4 1.41Up
Larval Salivary gland111 ± 24 of 4 1.17Up
Larval midgut51 ± 64 of 4 0.54Down
Larval tubule62 ± 54 of 4 0.70Down
Larval hindgut51 ± 44 of 4 0.54Down
Larval fat body101 ± 84 of 4 1.10None
Larval trachea111 ± 94 of 4 1.17None
Larval carcass72 ± 34 of 4 0.76Down
S2 cells (growing)63 ± 34 of 4 0.67Down
Whole fly95 ± 54 of 4

Looking for FBgn0038675. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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