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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038676 through 18771 annotations produced 1 hits



(CG6026):

Annotation Number : CG6026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038676
Gbrowse : chr3R:14865272-14869965 (+) // 100.0 //
Probeset : 1633124_at
Accessions : protein= NP_650778;, nucleotide= NM_142521;
FlyMine data for FBgn0038676.
VDRC has 3 RNAi stocks for FBgn0038676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.90None
Head2 ± 00 of 4 0.50None
Eye2 ± 00 of 4 0.68None
Thoracicoabdominal ganglion2 ± 00 of 4 0.70None
Salivary gland7 ± 40 of 4 1.86None
Crop6 ± 10 of 4 1.60None
Midgut3 ± 10 of 4 0.80None
Tubule1 ± 00 of 4 0.30Down
Hindgut4 ± 20 of 4 1.10None
Heart1 ± 00 of 4 0.43None
Fat body2 ± 21 of 4 0.68None
Ovary0 ± 00 of 4 0.20None
Testis0 ± 00 of 4 0.20None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca2 ± 00 of 4 0.55None
Mated spermatheca2 ± 10 of 4 0.72None
Adult carcass8 ± 20 of 4 2.10None
Larval CNS1 ± 00 of 4 0.27None
Larval Salivary gland1 ± 00 of 4 0.36None
Larval midgut3 ± 10 of 4 0.83None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut2 ± 10 of 4 0.62None
Larval fat body2 ± 00 of 4 0.70None
Larval trachea2 ± 10 of 4 0.56None
Larval carcass3 ± 10 of 4 0.88None
S2 cells (growing)3 ± 10 of 4 0.81None
Whole fly3 ± 20 of 4

Looking for FBgn0038676. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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