Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038678 through 18771 annotations produced 1 hits



tom thumb (mRpL55):

Annotation Number : CG14283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038678
Gbrowse : chr3R:14920109-14920619 (-) // 100.0 //
Probeset : 1623012_at
Accessions : protein= NP_650780;, nucleotide= NM_142523;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // non-traceable author statement /// 0005
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003729 //
FlyMine data for FBgn0038678.
BDGP gene expression has embryonic in situ data for mRpL55: 6 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0038678 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain451 ± 114 of 4 2.30Up
Head263 ± 104 of 4 1.30Up
Eye209 ± 104 of 4 1.07None
Thoracicoabdominal ganglion446 ± 244 of 4 2.30Up
Salivary gland97 ± 64 of 4 0.50Down
Crop241 ± 154 of 4 1.20None
Midgut133 ± 74 of 4 0.70Down
Tubule118 ± 64 of 4 0.60Down
Hindgut187 ± 34 of 4 1.00None
Heart202 ± 44 of 4 1.03None
Fat body204 ± 384 of 4 1.04None
Ovary293 ± 64 of 4 1.50Up
Testis86 ± 44 of 4 0.40Down
Male accessory glands71 ± 54 of 4 0.40Down
Virgin spermatheca185 ± 144 of 4 0.94None
Mated spermatheca209 ± 124 of 4 1.07None
Adult carcass206 ± 54 of 4 1.10None
Larval CNS279 ± 194 of 4 1.42Up
Larval Salivary gland226 ± 64 of 4 1.15None
Larval midgut130 ± 94 of 4 0.66Down
Larval tubule84 ± 74 of 4 0.40Down
Larval hindgut246 ± 74 of 4 1.26Up
Larval fat body60 ± 44 of 4 0.30Down
Larval trachea226 ± 174 of 4 1.16None
Larval carcass186 ± 344 of 4 0.95None
S2 cells (growing)188 ± 74 of 4 0.96None
Whole fly196 ± 134 of 4

Looking for FBgn0038678. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime