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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038682 through 18771 annotations produced 1 hits



/// (CG11779 /// CG5835):

Annotation Number : CG5835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038682 /// FBgn0038683
Gbrowse : chr3R:14974349-14979402 (-) // 100.0 //
Probeset : 1627354_at
Accessions : protein= NP_001027193; /// NP_001027194; /// NP_650785; /// NP_650786; /// NP_732403;, nucleotide= NM_001032022; /// NM_001032023; /// NM_142528; /// NM_142529; /// NM_169849;
Pathway : 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from sequence or structural similari
Interpro : 0008566 // mitochondrial protein-transporting ATPase activity // inferred from electronic annotation /// 0015450 // P-P-
FlyMine data for FBgn0038682 /// FBgn0038683.
BioGrid reports that CG5835 interacts with CG7987 CG8239 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 ± 84 of 4 1.20None
Head255 ± 224 of 4 1.70Up
Eye143 ± 124 of 4 0.93None
Thoracicoabdominal ganglion267 ± 324 of 4 1.70Up
Salivary gland317 ± 314 of 4 2.05Up
Crop98 ± 54 of 4 0.60Down
Midgut1253 ± 284 of 4 8.10Up
Tubule159 ± 534 of 4 1.00None
Hindgut210 ± 134 of 4 1.40Up
Heart19 ± 24 of 4 0.12Down
Fat body15 ± 24 of 4 0.10Down
Ovary38 ± 54 of 4 0.30Down
Testis34 ± 14 of 4 0.20Down
Male accessory glands67 ± 124 of 4 0.40Down
Virgin spermatheca114 ± 184 of 4 0.74None
Mated spermatheca133 ± 104 of 4 0.86None
Adult carcass298 ± 124 of 4 1.90Up
Larval CNS14 ± 14 of 4 0.09Down
Larval Salivary gland16 ± 24 of 4 0.11Down
Larval midgut794 ± 534 of 4 5.14Up
Larval tubule90 ± 74 of 4 0.60Down
Larval hindgut163 ± 74 of 4 1.06None
Larval fat body26 ± 44 of 4 0.20Down
Larval trachea290 ± 234 of 4 1.88Up
Larval carcass204 ± 154 of 4 1.32Up
S2 cells (growing)105 ± 54 of 4 0.68Down
Whole fly154 ± 54 of 4

Looking for FBgn0038682. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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