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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038690 through 18771 annotations produced 1 hits



(CG11703):

Annotation Number : CG11703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038690
Gbrowse : chr3R:15052624-15053902 (-) // 99.61 //
Probeset : 1638659_at
Accessions : protein= NP_650792;, nucleotide= NM_142535;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0005890 // sodium:potassium-exchanging ATPase complex /
Interpro : 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005391 // sodium:pota
FlyMine data for FBgn0038690.
BDGP gene expression has embryonic in situ data for CG11703: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.08Down
Crop5 ± 20 of 4 0.20Down
Midgut6 ± 20 of 4 0.30Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 00 of 4 0.09Down
Fat body6 ± 30 of 4 0.28Down
Ovary0 ± 00 of 4 0.00Down
Testis334 ± 194 of 415.30Up
Male accessory glands6 ± 10 of 4 0.30Down
Virgin spermatheca1 ± 00 of 4 0.08Down
Mated spermatheca4 ± 10 of 4 0.20Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 00 of 4 0.14Down
Larval midgut3 ± 00 of 4 0.17Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.08Down
Larval fat body37 ± 212 of 4 1.70None
Larval trachea3 ± 20 of 4 0.14Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly21 ± 24 of 4

Looking for FBgn0038690. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime