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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038692 through 18771 annotations produced 1 hits



anon-fast-evolving-2D12 (CG3773):

Annotation Number : CG3773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038692
Gbrowse : chr3R:15055214-15056554 (+) // 100.0 //
Probeset : 1624788_at
Accessions : protein= NP_650794;, nucleotide= NM_142537;
FlyMine data for FBgn0038692.
VDRC has 1 RNAi stocks for FBgn0038692 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 14 of 4 0.30Down
Head35 ± 24 of 4 0.40Down
Eye54 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion34 ± 34 of 4 0.30Down
Salivary gland69 ± 44 of 4 0.68Down
Crop63 ± 44 of 4 0.60Down
Midgut58 ± 24 of 4 0.60Down
Tubule41 ± 24 of 4 0.40Down
Hindgut60 ± 34 of 4 0.60Down
Heart62 ± 24 of 4 0.61Down
Fat body50 ± 44 of 4 0.50Down
Ovary220 ± 94 of 4 2.20Up
Testis25 ± 34 of 4 0.30Down
Male accessory glands64 ± 34 of 4 0.60Down
Virgin spermatheca63 ± 34 of 4 0.62Down
Mated spermatheca68 ± 44 of 4 0.68Down
Adult carcass45 ± 34 of 4 0.40Down
Larval CNS84 ± 24 of 4 0.83Down
Larval Salivary gland119 ± 34 of 4 1.17Up
Larval midgut67 ± 24 of 4 0.67Down
Larval tubule70 ± 14 of 4 0.70Down
Larval hindgut65 ± 14 of 4 0.64Down
Larval fat body49 ± 64 of 4 0.50Down
Larval trachea94 ± 44 of 4 0.93None
Larval carcass59 ± 24 of 4 0.58Down
S2 cells (growing)50 ± 24 of 4 0.49Down
Whole fly101 ± 24 of 4

Looking for FBgn0038692. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime