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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038701 through 18771 annotations produced 1 hits



(CG18493):

Annotation Number : CG18493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038701
Gbrowse : chr3R:15215993-15217854 (+) // 100.0 //
Probeset : 1638335_at
Accessions : protein= NP_650803;, nucleotide= NM_142546;
Interpro : 0008236 // serine-type peptidase activity // inferred from electronic annotation
FlyMine data for FBgn0038701.
BDGP gene expression has embryonic in situ data for CG18493: 11 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0038701 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye3 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland9 ± 40 of 4 0.04Down
Crop4 ± 10 of 4 0.00Down
Midgut2436 ± 734 of 411.00Up
Tubule6 ± 20 of 4 0.00Down
Hindgut181 ± 74 of 4 0.80None
Heart2 ± 00 of 4 0.01Down
Fat body3 ± 30 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis7 ± 00 of 4 0.00Down
Male accessory glands24 ± 22 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass5 ± 30 of 4 0.00Down
Larval CNS2 ± 30 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut1954 ± 1584 of 4 8.86Up
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut36 ± 94 of 4 0.16Down
Larval fat body7 ± 20 of 4 0.00Down
Larval trachea3 ± 10 of 4 0.01Down
Larval carcass3 ± 21 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly220 ± 344 of 4

Looking for FBgn0038701. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime