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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038709 through 18771 annotations produced 1 hits



(CG15025):

Annotation Number : CG15025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038709
Gbrowse : chr3R:15315291-15316837 (-) // 100.0 //
Probeset : 1633361_at
Accessions : protein= NP_650810;, nucleotide= NM_142553;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038709.
BDGP gene expression has embryonic in situ data for CG15025: 2 pix of staining in 1 body parts.
BioGrid reports that CG15025 interacts with CG9925 .
VDRC has 2 RNAi stocks for FBgn0038709 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland16 ± 21 of 4 0.37Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.04Down
Fat body1 ± 10 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis548 ± 104 of 412.20Up
Male accessory glands6 ± 30 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.05Down
Mated spermatheca4 ± 10 of 4 0.10Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.05Down
Larval Salivary gland8 ± 20 of 4 0.20Down
Larval midgut5 ± 00 of 4 0.13Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.08Down
Larval fat body57 ± 233 of 4 1.30None
Larval trachea5 ± 60 of 4 0.11Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)2 ± 10 of 4 0.06Down
Whole fly45 ± 54 of 4

Looking for FBgn0038709. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime