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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038716 through 18771 annotations produced 1 hits



(CG7342):

Annotation Number : CG7342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038716
Gbrowse : chr3R:15429832-15432200 (+) // 100.0 //
Probeset : 1629428_at
Accessions : protein= NP_650815;, nucleotide= NM_142558;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0038716.
Homophila reports that CG7342 is a close match (3e-11) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 3 RNAi stocks for FBgn0038716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 02 of 4 0.30Down
Head79 ± 74 of 4 3.90Up
Eye23 ± 44 of 4 1.14None
Thoracicoabdominal ganglion8 ± 03 of 4 0.40Down
Salivary gland12 ± 31 of 4 0.61None
Crop6 ± 20 of 4 0.30Down
Midgut11 ± 14 of 4 0.60Down
Tubule92 ± 124 of 4 4.50Up
Hindgut31 ± 24 of 4 1.50Up
Heart4 ± 11 of 4 0.22Down
Fat body6 ± 52 of 4 0.33Down
Ovary2 ± 00 of 4 0.10Down
Testis12 ± 14 of 4 0.60Down
Male accessory glands42 ± 34 of 4 2.10Up
Virgin spermatheca7 ± 11 of 4 0.35Down
Mated spermatheca5 ± 00 of 4 0.25Down
Adult carcass8 ± 20 of 4 0.40Down
Larval CNS5 ± 02 of 4 0.24Down
Larval Salivary gland14 ± 32 of 4 0.73None
Larval midgut11 ± 23 of 4 0.55Down
Larval tubule2426 ± 1374 of 4118.70Up
Larval hindgut18 ± 34 of 4 0.92None
Larval fat body1035 ± 994 of 450.70Up
Larval trachea4 ± 21 of 4 0.22Down
Larval carcass32 ± 94 of 4 1.58None
S2 cells (growing)16 ± 34 of 4 0.79None
Whole fly20 ± 24 of 4

Looking for FBgn0038716. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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