Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038718 through 18771 annotations produced 1 hits


(CG17752):

Annotation Number : CG17752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038718
Gbrowse : chr3R:15435946-15438159 (+) // 100.0 //
Probeset : 1627080_at
Accessions : protein= NP_650817;, nucleotide= NM_142560;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0038718.
BDGP gene expression has embryonic in situ data for CG17752: 32 pix of staining in 8 body parts.
Homophila reports that CG17752 is a close match (1e-15) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 4 RNAi stocks for FBgn0038718 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop2 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule6340 ± 1524 of 440.40Up
Hindgut1 ± 00 of 4 0.00Down
Heart4 ± 21 of 4 0.03Down
Fat body22 ± 371 of 4 0.14Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca6 ± 31 of 4 0.04Down
Mated spermatheca2 ± 00 of 4 0.01Down
Adult carcass8 ± 31 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut2 ± 00 of 4 0.01Down
Larval tubule5127 ± 2384 of 432.70Up
Larval hindgut40 ± 74 of 4 0.26None
Larval fat body9 ± 51 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass11 ± 20 of 4 0.08Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly156 ± 424 of 4

Looking for FBgn0038718. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime