FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038733 through 18771 annotations produced 2 hits

(CG11407):

Annotation Number : CG11407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038733
Gbrowse : chr3R:15606973-15608868 (+) // 100.0 //
Probeset : 1636674_at
Accessions : protein= NP_650831;, nucleotide= NM_142574;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0038733.
BDGP gene expression has embryonic in situ data for CG11407: 12 pix of staining in 2 body parts.
BioGrid reports that CG11407 interacts with CG12113 .
VDRC has 2 RNAi stocks for FBgn0038733 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	479 ± 6	4 of 4	6.30	Up
Head	462 ± 65	4 of 4	6.10	Up
Eye	325 ± 33	4 of 4	4.25	Up
Thoracicoabdominal ganglion	602 ± 54	4 of 4	7.90	Up
Salivary gland	169 ± 4	4 of 4	2.22	Up
Crop	13 ± 1	3 of 4	0.20	Down
Midgut	82 ± 2	4 of 4	1.10	None
Tubule	1289 ± 263	4 of 4	16.90	Up
Hindgut	210 ± 17	4 of 4	2.80	Up
Heart	6 ± 0	4 of 4	0.09	Down
Fat body	9 ± 5	0 of 4	0.13	Down
Ovary	3 ± 0	0 of 4	0.00	Down
Testis	3 ± 1	0 of 4	0.10	Down
Male accessory glands	8 ± 2	2 of 4	0.10	Down
Virgin spermatheca	13 ± 2	0 of 4	0.17	Down
Mated spermatheca	9 ± 2	1 of 4	0.12	Down
Adult carcass	307 ± 16	4 of 4	4.00	Up
Larval CNS	3 ± 1	0 of 4	0.05	Down
Larval Salivary gland	4 ± 1	0 of 4	0.06	Down
Larval midgut	5 ± 1	0 of 4	0.07	Down
Larval tubule	45 ± 4	4 of 4	0.60	None
Larval hindgut	6 ± 1	0 of 4	0.08	Down
Larval fat body	6 ± 1	0 of 4	0.10	Down
Larval trachea	7 ± 10	1 of 4	0.10	Down
Larval carcass	5 ± 2	0 of 4	0.07	Down
S2 cells (growing)	3 ± 1	0 of 4	0.05	Down
Whole fly	76 ± 11	4 of 4

/// /// (CG11407 /// CG11659 /// CG6300):

Annotation Number : CG11659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038730 /// FBgn0038731
Gbrowse : chrUextra:11635009-11635755 (-) // 43.58 // /// chr3R:15601194-15603002 (-) // 100.0 // /// chr3R:15597115-15598947 (-) // 98.23 //
Probeset : 1634097_s_at
Accessions : protein= NP_650828; /// NP_650829;, nucleotide= NM_142571; /// NM_142572;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0038730 /// FBgn0038731.
BioGrid reports that CG11659 interacts with CG12470 CG14534 CG2238 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.00	Down
Head	0 ± 0	0 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.04	Down
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.00	Down
Salivary gland	3 ± 1	0 of 4	0.13	Down
Crop	0 ± 0	0 of 4	0.00	Down
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	2709 ± 318	4 of 4	98.10	Up
Hindgut	23 ± 2	0 of 4	0.80	None
Heart	1 ± 0	0 of 4	0.07	Down
Fat body	3 ± 4	0 of 4	0.12	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	0 ± 0	0 of 4	0.00	Down
Male accessory glands	0 ± 0	0 of 4	0.00	Down
Virgin spermatheca	1 ± 0	0 of 4	0.06	Down
Mated spermatheca	1 ± 0	0 of 4	0.04	Down
Adult carcass	1 ± 0	0 of 4	0.00	Down
Larval CNS	0 ± 0	0 of 4	0.02	Down
Larval Salivary gland	1 ± 0	0 of 4	0.05	Down
Larval midgut	0 ± 0	0 of 4	0.02	Down
Larval tubule	156 ± 57	4 of 4	5.70	None
Larval hindgut	15 ± 5	2 of 4	0.57	None
Larval fat body	2 ± 1	0 of 4	0.10	Down
Larval trachea	2 ± 2	0 of 4	0.08	Down
Larval carcass	0 ± 0	0 of 4	0.02	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	27 ± 7	3 of 4

Looking for FBgn0038733. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720