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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038740 through 18771 annotations produced 1 hits



(CG4562):

Annotation Number : CG4562
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038740
Gbrowse : chr3R:15693191-15700941 (-) // 100.0 //
Probeset : 1625778_at
Accessions : protein= NP_001097841; /// NP_650838;, nucleotide= NM_001104371; /// NM_142581;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transpo
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0038740.
Homophila reports that CG4562 is a close match (8e-20) to human gene ABCB2;PSF1;RING4;TAP1 (NP_000584), a gene associated with Bare lymphocyte syndrome, type I, 604571 (3).
TRiP has 1 RNAi stocks for FBgn0038740 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038740 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 64 of 4 0.60Down
Head12 ± 13 of 4 0.10Down
Eye10 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion45 ± 94 of 4 0.40Down
Salivary gland11 ± 30 of 4 0.10Down
Crop9 ± 32 of 4 0.10Down
Midgut844 ± 324 of 4 7.60Up
Tubule136 ± 144 of 4 1.20None
Hindgut45 ± 14 of 4 0.40Down
Heart4 ± 10 of 4 0.04Down
Fat body4 ± 20 of 4 0.04Down
Ovary43 ± 54 of 4 0.40Down
Testis78 ± 74 of 4 0.70Down
Male accessory glands15 ± 30 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.04Down
Mated spermatheca4 ± 10 of 4 0.04Down
Adult carcass13 ± 21 of 4 0.10Down
Larval CNS9 ± 14 of 4 0.09Down
Larval Salivary gland8 ± 10 of 4 0.08Down
Larval midgut277 ± 264 of 4 2.49Up
Larval tubule28 ± 12 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.02Down
Larval fat body27 ± 31 of 4 0.20Down
Larval trachea4 ± 20 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)3 ± 10 of 4 0.03Down
Whole fly111 ± 84 of 4

Looking for FBgn0038740. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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