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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038741 through 18771 annotations produced 1 hits



(CG17186):

Annotation Number : CG17186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038741
Gbrowse : chr3R:15701934-15703139 (-) // 100.0 //
Probeset : 1627942_at
Accessions : protein= NP_650839;, nucleotide= NM_142582;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0038741.
BioGrid reports that CG17186 interacts with CG8204 CG18806 CG2865 CG31363 .
TRiP has 1 RNAi stocks for FBgn0038741 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 24 of 4 0.60Down
Head22 ± 34 of 4 0.40Down
Eye28 ± 24 of 4 0.56Down
Thoracicoabdominal ganglion30 ± 54 of 4 0.60Down
Salivary gland37 ± 14 of 4 0.75None
Crop32 ± 14 of 4 0.60Down
Midgut17 ± 14 of 4 0.30Down
Tubule26 ± 14 of 4 0.50Down
Hindgut29 ± 24 of 4 0.60Down
Heart15 ± 14 of 4 0.31Down
Fat body24 ± 24 of 4 0.48Down
Ovary108 ± 24 of 4 2.10Up
Testis21 ± 14 of 4 0.40Down
Male accessory glands30 ± 24 of 4 0.60Down
Virgin spermatheca25 ± 14 of 4 0.51Down
Mated spermatheca24 ± 14 of 4 0.48Down
Adult carcass28 ± 24 of 4 0.60Down
Larval CNS49 ± 74 of 4 0.97None
Larval Salivary gland22 ± 34 of 4 0.45Down
Larval midgut12 ± 13 of 4 0.24Down
Larval tubule27 ± 14 of 4 0.50Down
Larval hindgut24 ± 24 of 4 0.48Down
Larval fat body22 ± 34 of 4 0.50Down
Larval trachea38 ± 34 of 4 0.77None
Larval carcass16 ± 14 of 4 0.33Down
S2 cells (growing)53 ± 14 of 4 1.06None
Whole fly50 ± 44 of 4

Looking for FBgn0038741. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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