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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038742 through 18771 annotations produced 1 hits

Arc42 (Arc42):

Annotation Number : CG4703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038742
Gbrowse : chr3R:15703469-15705034 (+) // 100.0 //
Probeset : 1640900_at
Accessions : protein= NP_650840;, nucleotide= NM_142583;
Pathway : 0016592 // mediator complex // inferred from sequence or structural similarity
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from sequence or structural similarity /// 0003995 // acyl-CoA d
FlyMine data for FBgn0038742.
BDGP gene expression has embryonic in situ data for Arc42: 4 pix of staining in 1 body parts.
Homophila reports that CG4703 is a close match (1e-37) to human gene GCDH (NP_039663), a gene associated with Glutaricaciduria, type I, 231670 (3).
TRiP has 1 RNAi stocks for FBgn0038742 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038742 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 34 of 4 0.40Down
Head246 124 of 4 1.20None
Eye119 74 of 4 0.57Down
Thoracicoabdominal ganglion112 14 of 4 0.50Down
Salivary gland101 94 of 4 0.49Down
Crop339 94 of 4 1.60Up
Midgut161 84 of 4 0.80Down
Tubule210 54 of 4 1.00None
Hindgut290 54 of 4 1.40Up
Heart394 184 of 4 1.89Up
Fat body493 594 of 4 2.37Up
Ovary259 54 of 4 1.20Up
Testis42 14 of 4 0.20Down
Male accessory glands62 64 of 4 0.30Down
Virgin spermatheca853 204 of 4 4.09Up
Mated spermatheca672 794 of 4 3.23Up
Adult carcass350 144 of 4 1.70Up
Larval CNS146 104 of 4 0.70Down
Larval Salivary gland100 94 of 4 0.48Down
Larval midgut114 74 of 4 0.55Down
Larval tubule190 44 of 4 0.90None
Larval hindgut200 104 of 4 0.96None
Larval fat body653 494 of 4 3.10Up
Larval trachea238 234 of 4 1.14None
Larval carcass223 44 of 4 1.07None
S2 cells (growing)281 44 of 4 1.35Up
Whole fly208 94 of 4

Looking for FBgn0038742. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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