FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038746 through 18771 annotations produced 1 hits

Surfeit 6 (Surf6):

Annotation Number : CG4510
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038746
Gbrowse : chr3R:15729383-15730589 (-) // 100.0 //
Probeset : 1640644_at
Accessions : protein= NP_524408;, nucleotide= NM_079684;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structur
Interpro : 0015232 // heme transporter activity // non-traceable author statement
FlyMine data for FBgn0038746.
BioGrid reports that CG4510 interacts with CG6363 CG9306 .
TRiP has 1 RNAi stocks for FBgn0038746 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038746 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	47 ± 4	4 of 4	0.30	Down
Head	49 ± 6	4 of 4	0.30	Down
Eye	30 ± 1	4 of 4	0.20	Down
Thoracicoabdominal ganglion	58 ± 3	4 of 4	0.40	Down
Salivary gland	68 ± 4	3 of 4	0.45	Down
Crop	50 ± 3	4 of 4	0.30	Down
Midgut	37 ± 3	4 of 4	0.20	Down
Tubule	43 ± 8	3 of 4	0.30	Down
Hindgut	25 ± 2	1 of 4	0.20	Down
Heart	51 ± 5	4 of 4	0.34	Down
Fat body	61 ± 7	4 of 4	0.40	Down
Ovary	306 ± 9	4 of 4	2.00	Up
Testis	19 ± 3	2 of 4	0.10	Down
Male accessory glands	107 ± 14	4 of 4	0.70	None
Virgin spermatheca	50 ± 5	4 of 4	0.33	Down
Mated spermatheca	65 ± 1	4 of 4	0.43	Down
Adult carcass	61 ± 6	0 of 4	0.40	Down
Larval CNS	142 ± 9	4 of 4	0.93	None
Larval Salivary gland	105 ± 5	4 of 4	0.69	Down
Larval midgut	34 ± 3	4 of 4	0.23	Down
Larval tubule	22 ± 1	0 of 4	0.10	Down
Larval hindgut	53 ± 4	4 of 4	0.35	Down
Larval fat body	23 ± 3	0 of 4	0.20	Down
Larval trachea	137 ± 8	4 of 4	0.90	None
Larval carcass	100 ± 24	4 of 4	0.66	None
S2 cells (growing)	177 ± 5	4 of 4	1.16	None
Whole fly	152 ± 15	4 of 4

Looking for FBgn0038746. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720