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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038750 through 18771 annotations produced 1 hits



(CG4465):

Annotation Number : CG4465
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038750
Gbrowse : chr3R:15741589-15743554 (-) // 100.0 //
Probeset : 1630054_at
Accessions : protein= NP_650847;, nucleotide= NM_142590;
Interpro : 0008513 // secondary active organic cation transmembrane transporter activity // inferred from sequence or structural si
FlyMine data for FBgn0038750.
BDGP gene expression has embryonic in situ data for CG4465: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038750 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.30None
Head4 ± 10 of 4 0.50None
Eye16 ± 14 of 4 1.66Up
Thoracicoabdominal ganglion8 ± 11 of 4 0.80None
Salivary gland140 ± 114 of 414.16Up
Crop10 ± 30 of 4 1.10None
Midgut12 ± 21 of 4 1.30None
Tubule6 ± 00 of 4 0.70Down
Hindgut127 ± 124 of 412.80Up
Heart4 ± 10 of 4 0.47Down
Fat body8 ± 30 of 4 0.83None
Ovary5 ± 11 of 4 0.50Down
Testis6 ± 10 of 4 0.70None
Male accessory glands12 ± 10 of 4 1.20None
Virgin spermatheca5 ± 10 of 4 0.57Down
Mated spermatheca6 ± 10 of 4 0.66None
Adult carcass11 ± 00 of 4 1.10None
Larval CNS5 ± 21 of 4 0.51Down
Larval Salivary gland4 ± 20 of 4 0.47None
Larval midgut19 ± 33 of 4 1.93None
Larval tubule6 ± 11 of 4 0.60None
Larval hindgut1119 ± 434 of 4112.49Up
Larval fat body15 ± 21 of 4 1.50None
Larval trachea10 ± 33 of 4 1.08None
Larval carcass17 ± 24 of 4 1.80None
S2 cells (growing)9 ± 11 of 4 0.95None
Whole fly10 ± 02 of 4

Looking for FBgn0038750. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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