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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038751 through 18771 annotations produced 1 hits



(CG4770):

Annotation Number : CG4770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038751
Gbrowse : chr3R:15744253-15746239 (+) // 100.0 //
Probeset : 1627600_at
Accessions : protein= NP_650848;, nucleotide= NM_142591;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0038751.
VDRC has 3 RNAi stocks for FBgn0038751 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.00None
Head1 ± 00 of 4 0.90None
Eye0 ± 00 of 4 0.37None
Thoracicoabdominal ganglion1 ± 00 of 4 0.80None
Salivary gland8 ± 30 of 4 6.03None
Crop0 ± 00 of 4 0.40None
Midgut8 ± 20 of 4 5.40None
Tubule1 ± 00 of 4 1.00None
Hindgut3 ± 20 of 4 2.60None
Heart0 ± 00 of 4 0.24None
Fat body1 ± 00 of 4 0.71None
Ovary1 ± 00 of 4 0.70None
Testis1 ± 00 of 4 0.70None
Male accessory glands0 ± 00 of 4 0.50None
Virgin spermatheca2 ± 00 of 4 1.39None
Mated spermatheca0 ± 00 of 4 0.37None
Adult carcass2 ± 00 of 4 1.90None
Larval CNS0 ± 00 of 4 0.37None
Larval Salivary gland2 ± 10 of 4 1.88None
Larval midgut1 ± 10 of 4 1.20None
Larval tubule0 ± 00 of 4 0.50None
Larval hindgut28 ± 24 of 419.49Up
Larval fat body3 ± 10 of 4 2.10None
Larval trachea0 ± 00 of 4 0.56None
Larval carcass0 ± 00 of 4 0.66None
S2 cells (growing)1 ± 00 of 4 1.12None
Whole fly1 ± 00 of 4

Looking for FBgn0038751. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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