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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038760 through 18771 annotations produced 1 hits



Mediator complex subunit 25 (MED25):

Annotation Number : CG12254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038760
Gbrowse : chr3R:15834717-15837436 (+) // 100.0 //
Probeset : 1624006_at
Accessions : protein= NP_650854;, nucleotide= NM_142597;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from sequence or s
Interpro : 0016455 // RNA polymerase II transcription mediator activity // inferred from sequence or structural similarity
FlyMine data for FBgn0038760.
BDGP gene expression has embryonic in situ data for Arc92: 4 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0038760 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038760 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 74 of 4 1.40Up
Head52 04 of 4 0.80Down
Eye68 44 of 4 1.06None
Thoracicoabdominal ganglion72 04 of 4 1.10None
Salivary gland62 44 of 4 0.97None
Crop53 44 of 4 0.80None
Midgut54 14 of 4 0.80Down
Tubule38 24 of 4 0.60Down
Hindgut59 14 of 4 0.90None
Heart25 14 of 4 0.39Down
Fat body31 34 of 4 0.49Down
Ovary101 14 of 4 1.60Up
Testis19 14 of 4 0.30Down
Male accessory glands51 74 of 4 0.80None
Virgin spermatheca41 34 of 4 0.64Down
Mated spermatheca45 24 of 4 0.71Down
Adult carcass40 14 of 4 0.60Down
Larval CNS126 174 of 4 1.96Up
Larval Salivary gland80 54 of 4 1.25None
Larval midgut36 14 of 4 0.57Down
Larval tubule60 24 of 4 0.90None
Larval hindgut64 34 of 4 1.00None
Larval fat body54 24 of 4 0.80Down
Larval trachea70 34 of 4 1.10None
Larval carcass55 44 of 4 0.87None
S2 cells (growing)82 34 of 4 1.28Up
Whole fly64 34 of 4

Looking for FBgn0038760. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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