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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038762 through 18771 annotations produced 1 hits



L-iditol 2-dehydrogenase /// (CG4836 /// DsecGM17688):

Annotation Number : CG4836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038762
Gbrowse : chr3R:15839593-15843970 (+) // 99.85 //
Probeset : 1637780_a_at
Accessions : protein= NP_001138084; /// NP_001138085; /// NP_650856; /// NP_732476; /// NP_732477;, nucleotide= NM_001144612; /// NM_001144613; /// NM_142599; /// NM_169882; /// NM_169883;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003939 // L-iditol 2-dehydrogenase activity //
FlyMine data for FBgn0038762.
BDGP gene expression has embryonic in situ data for CG4836: 4 pix of staining in 1 body parts.
BioGrid reports that CG4836 interacts with CG8694 .
VDRC has 5 RNAi stocks for FBgn0038762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.00Down
Head7 ± 21 of 4 0.00Down
Eye4 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.00Down
Salivary gland13 ± 20 of 4 0.02Down
Crop9 ± 10 of 4 0.00Down
Midgut11 ± 11 of 4 0.00Down
Tubule10 ± 21 of 4 0.00Down
Hindgut8 ± 21 of 4 0.00Down
Heart4 ± 20 of 4 0.01Down
Fat body9 ± 21 of 4 0.01Down
Ovary7 ± 01 of 4 0.00Down
Testis3722 ± 1874 of 4 4.70Up
Male accessory glands15 ± 20 of 4 0.00Down
Virgin spermatheca6 ± 00 of 4 0.01Down
Mated spermatheca19 ± 33 of 4 0.02Down
Adult carcass38 ± 113 of 4 0.00Down
Larval CNS4 ± 11 of 4 0.01Down
Larval Salivary gland6 ± 11 of 4 0.01Down
Larval midgut12 ± 33 of 4 0.02Down
Larval tubule7 ± 00 of 4 0.00Down
Larval hindgut7 ± 11 of 4 0.01Down
Larval fat body553 ± 3274 of 4 0.70None
Larval trachea29 ± 323 of 4 0.04Down
Larval carcass10 ± 31 of 4 0.01Down
S2 cells (growing)5 ± 01 of 4 0.01Down
Whole fly793 ± 334 of 4

Looking for FBgn0038762. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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