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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038766 through 18771 annotations produced 1 hits



(CG4854):

Annotation Number : CG4854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038766
Gbrowse : chr3R:15853777-15855283 (+) // 99.43 //
Probeset : 1632327_at
Accessions : protein= NP_650860;, nucleotide= NM_142603;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038766.
BDGP gene expression has embryonic in situ data for CG4854: 28 pix of staining in 1 body parts.
Homophila reports that CG4854 is a close match (9e-11) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG4854 interacts with CG5792 .
VDRC has 4 RNAi stocks for FBgn0038766 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 14 of 4 0.80Down
Head10 01 of 4 0.30Down
Eye8 20 of 4 0.26Down
Thoracicoabdominal ganglion23 14 of 4 0.70Down
Salivary gland9 30 of 4 0.27Down
Crop37 01 of 4 1.10Up
Midgut9 10 of 4 0.30Down
Tubule4 00 of 4 0.10Down
Hindgut22 04 of 4 0.60Down
Heart6 20 of 4 0.18Down
Fat body7 12 of 4 0.21Down
Ovary91 34 of 4 2.70Up
Testis17 14 of 4 0.50Down
Male accessory glands18 52 of 4 0.60None
Virgin spermatheca4 00 of 4 0.13Down
Mated spermatheca5 10 of 4 0.15Down
Adult carcass7 10 of 4 0.20Down
Larval CNS47 34 of 4 1.41Up
Larval Salivary gland18 14 of 4 0.53Down
Larval midgut5 20 of 4 0.16Down
Larval tubule23 24 of 4 0.70Down
Larval hindgut12 11 of 4 0.37Down
Larval fat body5 21 of 4 0.20Down
Larval trachea13 24 of 4 0.40Down
Larval carcass10 10 of 4 0.32Down
S2 cells (growing)20 04 of 4 0.60Down
Whole fly34 04 of 4

Looking for FBgn0038766. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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