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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038767 through 18771 annotations produced 1 hits



CG4413 (trem):

Annotation Number : CG4413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038767
Gbrowse : chr3R:15855281-15857025 (-) // 100.0 //
Probeset : 1626039_at
Accessions : protein= NP_650861;, nucleotide= NM_142604;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0038767.
Homophila reports that CG4413 is a close match (8e-11) to human gene AITD3;ZFAT1;ZNF406 (NP_065914), a gene associated with {Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3).
TRiP has 1 RNAi stocks for FBgn0038767 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038767 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 14 of 4 0.90None
Head32 ± 24 of 4 0.60Down
Eye37 ± 14 of 4 0.65Down
Thoracicoabdominal ganglion48 ± 54 of 4 0.80None
Salivary gland41 ± 72 of 4 0.72None
Crop33 ± 14 of 4 0.60Down
Midgut25 ± 24 of 4 0.40Down
Tubule19 ± 23 of 4 0.30Down
Hindgut24 ± 14 of 4 0.40Down
Heart18 ± 14 of 4 0.32Down
Fat body18 ± 43 of 4 0.32Down
Ovary158 ± 34 of 4 2.70Up
Testis141 ± 44 of 4 2.40Up
Male accessory glands25 ± 14 of 4 0.40Down
Virgin spermatheca19 ± 14 of 4 0.34Down
Mated spermatheca18 ± 14 of 4 0.31Down
Adult carcass26 ± 43 of 4 0.50Down
Larval CNS93 ± 64 of 4 1.60Up
Larval Salivary gland41 ± 24 of 4 0.71Down
Larval midgut19 ± 12 of 4 0.34Down
Larval tubule26 ± 14 of 4 0.50Down
Larval hindgut22 ± 14 of 4 0.38Down
Larval fat body43 ± 144 of 4 0.80None
Larval trachea41 ± 34 of 4 0.71Down
Larval carcass24 ± 14 of 4 0.43Down
S2 cells (growing)56 ± 24 of 4 0.97None
Whole fly58 ± 44 of 4

Looking for FBgn0038767. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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