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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038768 through 18771 annotations produced 1 hits



(CG4936):

Annotation Number : CG4936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038768
Gbrowse : chr3R:15857541-15860053 (+) // 100.0 //
Probeset : 1626360_at
Accessions : protein= NP_650862;, nucleotide= NM_142605;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038768.
Homophila reports that CG4936 is a close match (6e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG4936 interacts with CG8346 CG5121 .
VDRC has 3 RNAi stocks for FBgn0038768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 34 of 4 1.00None
Head59 ± 54 of 4 0.50Down
Eye82 ± 54 of 4 0.73Down
Thoracicoabdominal ganglion80 ± 54 of 4 0.70Down
Salivary gland114 ± 164 of 4 1.02None
Crop65 ± 24 of 4 0.60Down
Midgut72 ± 24 of 4 0.60Down
Tubule67 ± 54 of 4 0.60Down
Hindgut70 ± 04 of 4 0.60Down
Heart50 ± 34 of 4 0.45Down
Fat body55 ± 54 of 4 0.49Down
Ovary236 ± 54 of 4 2.10Up
Testis31 ± 14 of 4 0.30Down
Male accessory glands87 ± 24 of 4 0.80Down
Virgin spermatheca61 ± 24 of 4 0.55Down
Mated spermatheca62 ± 14 of 4 0.56Down
Adult carcass38 ± 31 of 4 0.30Down
Larval CNS251 ± 144 of 4 2.24Up
Larval Salivary gland126 ± 54 of 4 1.12None
Larval midgut64 ± 52 of 4 0.57Down
Larval tubule53 ± 24 of 4 0.50Down
Larval hindgut73 ± 34 of 4 0.65Down
Larval fat body41 ± 24 of 4 0.40Down
Larval trachea110 ± 74 of 4 0.99None
Larval carcass72 ± 64 of 4 0.65Down
S2 cells (growing)148 ± 44 of 4 1.33Up
Whole fly112 ± 24 of 4

Looking for FBgn0038768. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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