Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038774 through 18771 annotations produced 1 hits



(CG5023):

Annotation Number : CG5023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038774
Gbrowse : chr3R:15995157-16000597 (+) // 100.0 //
Probeset : 1631167_at
Accessions : protein= NP_650867;, nucleotide= NM_142610;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0038774.
BDGP gene expression has embryonic in situ data for CG5023: 13 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0038774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 22 of 4 0.00Down
Head227 ± 324 of 4 0.90None
Eye43 ± 104 of 4 0.18Down
Thoracicoabdominal ganglion23 ± 44 of 4 0.10Down
Salivary gland9 ± 20 of 4 0.04Down
Crop3569 ± 2464 of 414.70Up
Midgut153 ± 34 of 4 0.60None
Tubule17 ± 22 of 4 0.10Down
Hindgut1238 ± 104 of 4 5.10Up
Heart1090 ± 974 of 4 4.49Up
Fat body33 ± 74 of 4 0.14Down
Ovary14 ± 21 of 4 0.10Down
Testis7 ± 10 of 4 0.00Down
Male accessory glands21 ± 20 of 4 0.10Down
Virgin spermatheca24 ± 33 of 4 0.10Down
Mated spermatheca37 ± 44 of 4 0.15Down
Adult carcass750 ± 444 of 4 3.10Up
Larval CNS4 ± 10 of 4 0.02Down
Larval Salivary gland3 ± 00 of 4 0.01Down
Larval midgut44 ± 34 of 4 0.18Down
Larval tubule15 ± 01 of 4 0.10Down
Larval hindgut1107 ± 544 of 4 4.56Up
Larval fat body8 ± 20 of 4 0.00Down
Larval trachea129 ± 784 of 4 0.53None
Larval carcass2358 ± 1684 of 4 9.71Up
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly242 ± 284 of 4

Looking for FBgn0038774. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime