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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038775 through 18771 annotations produced 1 hits



(CG17199):

Annotation Number : CG17199
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038775
Gbrowse : chr3R:16033922-16035513 (-) // 100.0 //
Probeset : 1628191_at
Accessions : protein= NP_650868;, nucleotide= NM_142611;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0038775.
VDRC has 1 RNAi stocks for FBgn0038775 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland11 ± 30 of 4 0.66None
Crop7 ± 20 of 4 0.40Down
Midgut3 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.11Down
Fat body2 ± 30 of 4 0.17Down
Ovary1 ± 00 of 4 0.10Down
Testis225 ± 124 of 413.60Up
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca4 ± 10 of 4 0.26Down
Mated spermatheca2 ± 10 of 4 0.15Down
Adult carcass10 ± 10 of 4 0.70Down
Larval CNS1 ± 20 of 4 0.10Down
Larval Salivary gland4 ± 10 of 4 0.24Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule5 ± 20 of 4 0.40Down
Larval hindgut1 ± 10 of 4 0.10Down
Larval fat body24 ± 131 of 4 1.40None
Larval trachea2 ± 10 of 4 0.13Down
Larval carcass4 ± 10 of 4 0.26Down
S2 cells (growing)3 ± 10 of 4 0.24Down
Whole fly16 ± 04 of 4

Looking for FBgn0038775. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime