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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038784 through 18771 annotations produced 1 hits



(CG4362):

Annotation Number : CG4362
Flybase ID : FBgn0038784
Gbrowse : chr3R:16132034-16133242 (-) // 100.0 //
Probeset : 1641221_at
Accessions : protein= NP_650876;, nucleotide= NM_142619;
Pathway : 0019028 // viral capsid // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038784.
BDGP gene expression has embryonic in situ data for CG4362: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038784 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.90None
Head1 00 of 4 0.60None
Eye2 00 of 4 0.90None
Thoracicoabdominal ganglion3 00 of 4 1.30None
Salivary gland15 30 of 4 6.57Up
Crop5 20 of 4 2.10None
Midgut3 10 of 4 1.70None
Tubule4 10 of 4 1.80None
Hindgut6 20 of 4 2.60None
Heart3 10 of 4 1.59None
Fat body6 50 of 4 2.78None
Ovary1 00 of 4 0.60None
Testis7 20 of 4 3.20None
Male accessory glands1 00 of 4 0.80None
Virgin spermatheca3 10 of 4 1.57None
Mated spermatheca4 20 of 4 2.03None
Adult carcass5 10 of 4 2.30None
Larval CNS3 20 of 4 1.36None
Larval Salivary gland1 00 of 4 0.71None
Larval midgut2629 1334 of 41118.97Up
Larval tubule10 20 of 4 4.20Up
Larval hindgut3 10 of 4 1.64None
Larval fat body10 10 of 4 4.30Up
Larval trachea3 30 of 4 1.29None
Larval carcass1 00 of 4 0.84None
S2 cells (growing)8 10 of 4 3.63Up
Whole fly2 10 of 4

Looking for FBgn0038784. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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